PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0171s00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 341aa    MW: 36935.3 Da    PI: 8.2238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0171s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16266311555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Vradi0171s00110.1 266 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 311
                        9************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.815261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-17264333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-13266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17266329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-17266313No hitNo description
SMARTSM003531.8E-16267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSQCVPSWDV DDNPPPPRLS LRSNSNSTAP DVPMLDYEVA ELTWENGQLS MHGLGLPRVP  60
VKLPTIAANK YTWEKPRAGG TLESIVNQAT SLPHRGKPTL NGDGGVYGNF LVPWLDPHAA  120
TANTVTMDAL VPCSKREQGM ESVPSTCMVG CSTRVGSCCG NHGAKGQEMS GRDQSVSGSA  180
TFGRDSKHVT LDTCDREHGV AFTSTSINSL DNTSSAKHCT KTTTVDDHDS VSHSKPVGEN  240
EEEEKKKSGN GKSSVSTKRS RAAAIHNQSE RKRRDKINQR MKTLQKLVPN SSKTDKASML  300
DEVIEYLKQL QAQPMNMDAY SRLAAMYQQL HQPPVSGSKN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274ERKRRD
2270275RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524045.10.0PREDICTED: transcription factor UNE10 isoform X2
SwissprotQ8GZ385e-93UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0L9U6B00.0A0A0L9U6B0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVI60.0A0A0S3RVI6_PHAAN; Uncharacterized protein
STRINGGLYMA01G15930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-79bHLH family protein